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AGAP / Workflows / RNA_seq
GNU Affero General Public License v3.0A Snakemake workflow for producing count matrix suitable for differential expression analysis and formatted for DIANE.
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Herds Activity Mapping and Analytical Classification routine
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AGAP / GIV / GPGxE
Apache License 2.0Updated -
AGAP / Workflows / BS-Seq
MIT LicenseUpdated -
Forêts et Sociétés / Projets / FLCD
Creative Commons Attribution 4.0 InternationalPackage R / Fusion-Lasso Change Detection method
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AGAP / Workflows / CutAndTag
MIT LicenseUpdated -
selmet / livtools / laserdemog
GNU General Public License v3.0 or laterR package using a discrete-time approach for estimating demographic parameters from animal-based monitoring Laser data
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Eco-sols / maespa
GNU General Public License v2.0 or laterMAESPA model based on Remi Vezy branch of the GitHub repository : https://maespa.github.io/
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AGAP / Workflows / cactus-pangenome
GNU Affero General Public License v3.0Updated -
selmet / tatale
GNU General Public License v3.0 or laterR package: Tools for Assessment with Transformation and Aggregation using simple Logic and Expertise
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selmet / livtools / mmage
GNU General Public License v3.0 or laterR package for simulating age-structured population matrix models
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selmet / livtools / t12mo
GNU General Public License v3.0 or laterR package for calculating demographic parameters of livestock populations from 12MO survey data
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Agent-based and stock-flow model to assess the effect of crop-livestock integration on carbon balance in Sahel territories.
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selmet / tdisplay
GNU General Public License v3.0 or laterR Tool Box for Data Importation and Display
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