Explore projects
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AGAP / Workflows / RNA_seq
GNU Affero General Public License v3.0A Snakemake workflow for producing count matrix suitable for differential expression analysis and formatted for DIANE.
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AGAP / Workflows / GenomeAssembly
GNU General Public License v3.0 or laterUpdated -
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AMAP / Vitis
OtherUpdated -
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AGAP / Workflows / Funcannotate
GNU Affero General Public License v3.0A snakemake workflow for functional annotationUpdated -
AGAP / Workflows / BS-Seq
MIT LicenseUpdated -
AGAP / Workflows / Gene Family
MIT LicenseA snakemake workflow for phylogenetic analysis of protein families
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AGAP / Workflows / GATK
CeCILL-C Free Software License AgreementA snakemake workflow for SNP Calling using GATK4
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AGAP / Workflows / CutAndTag
MIT LicenseUpdated -
AGAP / Workflows / Snakeblast
GNU Affero General Public License v3.0Updated -
AGAP / Workflows / ComparativeGenomics
MIT LicenseA Snakemake workflow to identify syntenic blocks and orthogroup for a set of species
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AGAP / Workflows / cactus-pangenome
GNU Affero General Public License v3.0Updated -
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acottin / lai-comparison
GNU General Public License v3.0 or laterUpdated