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Documentation pour débuter sur la forge logicielle du Cirad. Elle inclut l'organisation de la forge basée sur des groupes avec référents, les bases de Git et des liens vers les documentations officielles gitlab.com et git-scm.com
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Herds Activity Mapping and Analytical Classification routine
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Agent-based and stock-flow model to assess the effect of crop-livestock integration on carbon balance in Sahel territories.
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AGAP / Workflows / Funcannotate
GNU Affero General Public License v3.0A snakemake workflow for functional annotationUpdated -
ARCHIMED modeling platform is used to simulate the biophysical processes such as leaf irradiation, transpiration, temperature and ultimately carbon assimilation. By doing so, detailed information can be integrated from the individual leaf scale up to the individual plant scale, even within complex stands such as agroforestry systems. Simple numerical methods are used for solving multiple feedback between light, energy, water and CO2 transfers at leaf, plant and plot scales. Numerical calculations applied at different scales allow simple implementation of complex models involving intricate processes.
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AGAP / Workflows / Gene Family
MIT LicenseA snakemake workflow for phylogenetic analysis of protein families
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A spreadsheet interface for demographic projections of extensively managed livestock populations
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selmet / tdisplay
GNU General Public License v3.0 or laterR Tool Box for Data Importation and Display
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Eco-sols / maespa
GNU General Public License v2.0 or laterMAESPA model based on Remi Vezy branch of the GitHub repository : https://maespa.github.io/
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selmet / tatale
GNU General Public License v3.0 or laterR package: Tools for Assessment with Transformation and Aggregation using simple Logic and Expertise
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NOISYmputer / NOISYmputerStandAlone
GNU Affero General Public License v3.0Updated -
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Elixir french node (IFB) training on Plant Genome Assembly and Annotation.
ELIXIR-EXCELERATE project was funded by the European Commission within the Research Infrastructures programme of Horizon 2020 (grant agreement number 676559).
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AGAP / Workflows / CutAndTag
MIT LicenseUpdated