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Documentation pour débuter sur la forge logicielle du Cirad. Elle inclut l'organisation de la forge basée sur des groupes avec référents, les bases de Git et des liens vers les documentations officielles gitlab.com et git-scm.com

Site web pour la formation "Régression Bayésienne en pratique". https://astre.gitlab.cirad.fr/training/practical-bayes/

Agent-based and stock-flow model to assess the effect of crop-livestock integration on carbon balance in Sahel territories.

A snakemake workflow for functional annotation

Projet pour mettre en oeuvre la méthode Getting Things Done de David Allen avec les outils Cirad

Herds Activity Mapping and Analytical Classification routine

Estimation and Simulation of Animal Production

ARCHIMED modeling platform is used to simulate the biophysical processes such as leaf irradiation, transpiration, temperature and ultimately carbon assimilation. By doing so, detailed information can be integrated from the individual leaf scale up to the individual plant scale, even within complex stands such as agroforestry systems. Simple numerical methods are used for solving multiple feedback between light, energy, water and CO2 transfers at leaf, plant and plot scales. Numerical calculations applied at different scales allow simple implementation of complex models involving intricate processes.

https://archimed-platform.github.io/archimed-phys-user-doc/

Elixir french node (IFB) training on Plant Genome Assembly and Annotation.

ELIXIR-EXCELERATE project was funded by the European Commission within the Research Infrastructures programme of Horizon 2020 (grant agreement number 676559).

Common classes to all Archimed related projects

R package for calculating demographic parameters of livestock populations from 12MO survey data

A Snakemake workflow for producing count matrix suitable for differential expression analysis and formatted for DIANE.

Examples of how to use the Vanilla Genome Hub