Explore projects
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Description of the presentation topic. Include a link to the URL where the slides are published, like so. https://astre.gitlab.cirad.fr/templates/slides-quarto/
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AGAP / Workflows / ComparativeGenomics
MIT LicenseA Snakemake workflow to identify syntenic blocks and orthogroup for a set of species
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Valentin GUIGNON / GreenPhyl
Creative Commons Attribution Non Commercial Share Alike 4.0 InternationalGreenPhyl database project. Contains common sources of all GreenPhyl instances.
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selmet / tdisplay
GNU General Public License v3.0 or laterR Tool Box for Data Importation and Display
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Examples of how to use the Vanilla Genome Hub
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AGAP / SEG / HaploCharmer
GNU General Public License v3.0 or laterUpdated -
AGAP / Workflows / BS-Seq
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ASTRE / Training materials / modelisation-dynamique-epidemiologie
Creative Commons Attribution 4.0 InternationalModèles mathématiques appliquées à l'épidémiologie https://astre.gitlab.cirad.fr/training/modelisation-dynamique-epidemiologie
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selmet / livtools / mmage
GNU General Public License v3.0 or laterR package for simulating age-structured population matrix models
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AGAP / Workflows / Gene Family
MIT LicenseA snakemake workflow for phylogenetic analysis of protein families
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Forêts et Sociétés / Projets / FLCD
Creative Commons Attribution 4.0 InternationalPackage R / Fusion-Lasso Change Detection method
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AGAP / Workflows / CutAndTag
MIT LicenseUpdated -
selmet / livtools / 12mo
GNU General Public License v3.0 or laterRetrospective method for estimating annual demographic parameters in ruminants livestock herds
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A self-paced course on git and GitLab.
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