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Documentation pour débuter sur la forge logicielle du Cirad. Elle inclut l'organisation de la forge basée sur des groupes avec référents, les bases de Git et des liens vers les documentations officielles gitlab.com et git-scm.com
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Eco-sols / maespa
GNU General Public License v2.0 or laterMAESPA model based on Remi Vezy branch of the GitHub repository : https://maespa.github.io/
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Projet pour mettre en oeuvre la méthode Getting Things Done de David Allen avec les outils Cirad
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Tuto d'introduction à Git et GitLab depuis Rstutio
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NOISYmputer / NOISYmputerStandAlone
GNU Affero General Public License v3.0Updated -
AGAP / Workflows / Gene Family
MIT LicenseA snakemake workflow for phylogenetic analysis of protein families
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acottin / plmgg
GNU General Public License v3.0 or laterUpdated -
acottin / lai-comparison
GNU General Public License v3.0 or laterUpdated -
AGAP / Workflows / GATK
CeCILL-C Free Software License AgreementA snakemake workflow for SNP Calling using GATK4
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AGAP / Workflows / Funcannotate
GNU Affero General Public License v3.0A snakemake workflow for functional annotationUpdated -
Elixir french node (IFB) training on Plant Genome Assembly and Annotation.
ELIXIR-EXCELERATE project was funded by the European Commission within the Research Infrastructures programme of Horizon 2020 (grant agreement number 676559).
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AGAP / Workflows / ComparativeGenomics
MIT LicenseA Snakemake workflow to identify syntenic blocks and orthogroup for a set of species
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AGAP / Workflows / RNA_seq
GNU Affero General Public License v3.0A Snakemake workflow for producing count matrix suitable for differential expression analysis and formatted for DIANE.
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