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Retrospective method for estimating annual demographic parameters in ruminants livestock herds
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ARCHIMED modeling platform is used to simulate the biophysical processes such as leaf irradiation, transpiration, temperature and ultimately carbon assimilation. By doing so, detailed information can be integrated from the individual leaf scale up to the individual plant scale, even within complex stands such as agroforestry systems. Simple numerical methods are used for solving multiple feedback between light, energy, water and CO2 transfers at leaf, plant and plot scales. Numerical calculations applied at different scales allow simple implementation of complex models involving intricate processes.
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A Snakemake workflow to identify syntenic blocks and orthogroup for a set of species
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Documentation pour débuter sur la forge logicielle du Cirad. Elle inclut l'organisation de la forge basée sur des groupes avec référents, les bases de Git et des liens vers les documentations officielles gitlab.com et git-scm.com
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A spreadsheet interface for demographic projections of extensively managed livestock populations
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Elixir french node (IFB) training on Plant Genome Assembly and Annotation.
ELIXIR-EXCELERATE project was funded by the European Commission within the Research Infrastructures programme of Horizon 2020 (grant agreement number 676559).
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A snakemake workflow for phylogenetic analysis of protein families
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